/*
Copyright 2017, Michael R. Hoopmann, Institute for Systems Biology
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
    http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
*/

#ifndef _CANALYSISCOLLECTION_H
#define _CANALYSISCOLLECTION_H

#include "CProteinDetection.h"
#include "CSpectrumIdentification.h"
#include <vector>

class CAnalysisCollection {
public:

  //Constructors & Destructor
  CAnalysisCollection();
  CAnalysisCollection(const CAnalysisCollection& c);
  ~CAnalysisCollection();

  //Data members
  std::vector<CSpectrumIdentification>* spectrumIdentification;
  CProteinDetection proteinDetection;

  //operators
  CAnalysisCollection& operator=(const CAnalysisCollection& c);

  //Functions
  void addProteinDetection(CProteinDetection& c);
  void addSpectrumIdentification(CSpectrumIdentification& c);
  CSpectrumIdentification& spectrumIdent(const size_t& index);
  void writeOut(FILE* f, int tabs = -1);

private:
};

#endif